Our previous systematic knockdown analyses of RP genes in zebrafish produced gene-specific phenotypes

Criterion for the degree of membrane destabilization expected for a fusion peptide. On the other hand a common property of fusion peptides is the tendency to promote negative curvatures in the membrane. For this PF-04217903 abmole reason fusion peptides tend to lower the bilayer to hexagonal phase transition temperature of phosphatidylethanolamines. In principle only peptides which present a significant effect on the polymorphic phase behavior of DEPE could be located in regions implicated in a stabilization/destabilization role of lamellar/non-lamellar structures, roles needed for fusion and budding. These reactive oxygen species and their products can modify nucleotide bases, cleave the phosphate backbone of DNA, crosslink proteins and lipids by free-radical driven chain reactions, and damage the active sites of critical enzymes. Organisms that thrive within or tolerate an oxygen-rich environment mount two critical lines of enzymatic defense against these reactive oxygen species. Most of the somatic mutations we found have been reported, including mutations in EGFR, KRAS, BRAF, and PIK3CA. The relative distribution of these mutations in our lung adenocarcinomas matches that observed by others. A limitation in our present study is the use of ectopically expressed tensin2. Detection of endogenous tensin2 was not possible, as the tensin2 antibody was not available in our laboratory. Interaction between endogenous DLC1 and tensin2 must be examined to reflect their binding in the actual biological context. On the other hand, we performed preliminary quantitative real time PCR analysis to determine the mRNA expression levels of DLC1 and tensin2 in human HCC tissues. Our unpublished data showed that underexpression of both DLC1 and tensin2 was correlated with shorter overall survival when compared with those who had normal expression of either or both genes, supporting the possible functional association of DLC1tensin2 with hepatocarcinogenesis. Altogether, we have identified a novel tensin2 PTB binding site in DLC1 and demonstrated its involvement in tensin2 interactions. Although the removal of the PTB binding site didnot affect the focal adhesion localization, it partially reduced the RhoGAP activity of DLC1, which attenuated its growth suppressive function. It would be interesting to uncover how DLC1 may control the activity of other focal adhesion molecules. We have also provided early evidence that the DLC1 paralog, DLC2, may also interact with tensin2 and localize to focal adhesions. The conservation of the tensin binding site in DLC2 warrants further investigation into the localization control of the other DLC family members. This will clearly help to determine if DLC members are biologically redundant or if they have different compartmentalization for performing separate biological functions. The frequency of EGFR and KRAS mutations was slightly lower than other published series, possibly because the mutation detection software that we used went through various stages of development during this project.

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